PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105879.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 325aa    MW: 36460.7 Da    PI: 6.322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.5e-16126177155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s++ + a+i+  A++Y+k+L+
  XP_009105879.1 126 QRMTHIAVERNRRKQMNEYLAALRSLMPPC---YSQRGDQASIVGGAINYLKELE 177
                     79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.51E-15124181No hitNo description
PROSITE profilePS5088816.964125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-19125190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-16126190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MALETVVYLQ DPLSYSSCKD FPFHDLYFQQ GEDQDPLDTK NNIKLGQEQR QGFGSINYNG  60
KGGDNSVDYS YNDQVDLQWP LHELPYGSTV DTKNHPPPSD MAATGGERRK RRRTRSNKNK  120
EEIENQRMTH IAVERNRRKQ MNEYLAALRS LMPPCYSQRG DQASIVGGAI NYLKELEHQL  180
QSMEPQVKTT ATKETRSTVG DKNNTITASS SGPFSDFFAF PQYSSRPSSS SVAEGTAEIE  240
VTMVESHASV KILAKKRPKQ LLKLVASIQS LRLTLLHLNV TTHDDSVLYS ISLKVEEGSQ  300
LNTVEDIAAA VNQILMRIEE ESPLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112RKRRR
2108113RKRRRT
3126137RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105879.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T41e-176BH096_ARATH; Transcription factor bHLH96
TrEMBLM4DHV30.0M4DHV3_BRARP; Uncharacterized protein
STRINGBra016080.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-168bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]