PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105602.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 284aa    MW: 32334.8 Da    PI: 6.3579
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.6e-1222601350
                    HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    +  R +++lKKA+ELS LC+++v++i +  +g+l ++++
  XP_009105602.1 22 YNARAATVLKKAFELSELCGVDVCIIWYDREGNLvKTWP 60
                    66799************************9998637887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.45E-102097IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.6342255IPR002100Transcription factor, MADS-box
PfamPF003194.0E-82255IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MKMNKLLVRK DTVFKIASSA LYNARAATVL KKAFELSELC GVDVCIIWYD REGNLVKTWP  60
ENEEAKVRAM AARYSMLSEE EKGKKRNNLS GFLYKKMIRD KKESLRKRDN KFFQEVSELE  120
DSLQSCLQTL KESLHLDQPQ DLSSNDSSLI NVYHHQASSL LSYPSSSSEN CVDDVSTTTT  180
TMNHPQSKFS ILLFNHENGA LTQLANPSAL PSFEQQPQIQ CNQNYGTNYM DLLLGEQGCN  240
NVDLLMPTLF PPPMMMQTQT PNFQQFMQTQ PVYNQIPVFG TMLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105602.10.0PREDICTED: agamous-like MADS-box protein AGL53
RefseqXP_013650696.10.0agamous-like MADS-box protein AGL53
TrEMBLA0A3P6BZS00.0A0A3P6BZS0_BRACM; Uncharacterized protein
TrEMBLM4CIN70.0M4CIN7_BRARP; Uncharacterized protein
STRINGBra004071.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.12e-37AGAMOUS-like 53