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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105599.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 170aa MW: 19200.9 Da PI: 9.7629 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 8.3e-10 | 116 | 160 | 3 | 52 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +a n++E+rRR++i++++e L++l P++ kK + a++L ++ I+ XP_009105599.1 116 EARNIAEKRRRADIKTKIEHLKQLTPNC-----KKRDIASTLDCIIDNIR 160 578************************9.....89999999999888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-9 | 110 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-11 | 110 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.262 | 113 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.83E-7 | 116 | 164 | No hit | No description |
Pfam | PF00010 | 9.6E-7 | 117 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-7 | 119 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MDKDRESLQF WSSLLYSLAD SDPKDGLFPE ISSPIMVMST SMATDVSPKP SNAPGDGDRD 60 EARRFLAGQG KAIAETGDKI IHEGGQRSAE KQIEVEKKVG AIKETKNLGK RPRTNEARNI 120 AEKRRRADIK TKIEHLKQLT PNCKKRDIAS TLDCIIDNIR WMKHYVERHV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105599.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105599.1 | 1e-124 | PREDICTED: putative transcription factor bHLH056 | ||||
TrEMBL | A0A078F1W7 | 3e-77 | A0A078F1W7_BRANA; BnaA07g24700D protein | ||||
TrEMBL | A0A3P6BJX1 | 2e-77 | A0A3P6BJX1_BRACM; Uncharacterized protein | ||||
STRING | Bo6g097200.1 | 6e-78 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15740 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68240.2 | 9e-10 | bHLH family protein |