PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105513.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 331aa    MW: 37499.3 Da    PI: 7.5943
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.74.8e-322882155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl
  XP_009105513.1 28 KPRLKWTCELHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 82
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-282682IPR009057Homeodomain-like
SuperFamilySSF466892.33E-152782IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-222883IPR006447Myb domain, plants
PfamPF002492.9E-63081IPR001005SANT/Myb domain
PfamPF143791.0E-22129175IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MCLLMESNTT NGNNQKTKMS LVLSTDAKPR LKWTCELHHR FIEAVNQLGG PNKATPKGLM  60
KAMEIPGLTL YHLKSHLQKY RLGKSLKFDD NNLEDSSASE TQEAESKNVS TDFRGSVNVE  120
NNNPANEGVQ ITEALQLQME VQKKLHEQIE VQRHLQVKIE AQGKYLQSVL LKAQHTLAGY  180
TSSTLGMDFA RTELSRLASM VNQSSSFSEL TQVEEYKEEG FLWCKKQENR GTTHPRRSVE  240
SSLTSSESSE TNLNKNNDER MSVELPLMEI KSEKLTEKKK RSLNDVVCME RQPPKKRNLG  300
AYDDDDEHLR LSLNSYKKDM GTCPNIGLGF N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-192784158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105513.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105513.10.0PREDICTED: myb family transcription factor PHL8-like isoform X2
SwissprotF4I2741e-163PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLM4CJL30.0M4CJL3_BRARP; Uncharacterized protein
STRINGBra004397.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-163G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]