PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105453.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 313aa    MW: 34584.9 Da    PI: 5.935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.8e-154998255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+  E+rRR++iN++f+ Lre++P++     +K + a+ L ++++Y+++Lq
  XP_009105453.1 49 RSKHSVTEQRRRSKINERFQILREIIPNS----EQKRDTASFLLEVIDYVQYLQ 98
                    899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-1845118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-2146119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0694797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-1449102No hitNo description
PfamPF000101.2E-124998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1153103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRTGKANQEE DDYGEEDFGS KREGPSSHNS NSAAASRDVK ENDKASAIRS KHSVTEQRRR  60
SKINERFQIL REIIPNSEQK RDTASFLLEV IDYVQYLQEK VQKYEGSYPG WGQEPTKLTP  120
WRNNHWRVQS LANGSVPVIP FPGKFEENSV AFSGPPAVVA ELQNPVESDQ GRATVYKPIE  180
SQPEFDDKEL PPVQPVHHPL VHGEQANNEC PATSDGAGHS NNDLVVEGGT ISISTAYSHE  240
LLSSLTQALQ NAGVDLSHAK LSVQIELGKR ANQGLTHNDP SNKNPFSSDI EGATRSRSGE  300
GESEHAHKRM KTL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.30020.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105453.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894580.0AC189458.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073F16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105453.10.0PREDICTED: transcription factor BIM2
SwissprotQ9CAA41e-163BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A397YZU80.0A0A397YZU8_BRACM; Uncharacterized protein
STRINGBra004355.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-154BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]