PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 313aa MW: 34584.9 Da PI: 5.935

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009105453.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.7	2.8e-15	49	98	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lre++P++ +K + a+ L ++++Y+++Lq XP_009105453.1 49 RSKHSVTEQRRRSKINERFQILREIIPNS----EQKRDTASFLLEVIDYVQYLQ 98 899***********************8....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-18	45	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-21	46	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.069	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.93E-14	49	102	No hit	No description
Pfam	PF00010	1.2E-12	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-11	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MRTGKANQEE DDYGEEDFGS KREGPSSHNS NSAAASRDVK ENDKASAIRS KHSVTEQRRR 60 SKINERFQIL REIIPNSEQK RDTASFLLEV IDYVQYLQEK VQKYEGSYPG WGQEPTKLTP 120 WRNNHWRVQS LANGSVPVIP FPGKFEENSV AFSGPPAVVA ELQNPVESDQ GRATVYKPIE 180 SQPEFDDKEL PPVQPVHHPL VHGEQANNEC PATSDGAGHS NNDLVVEGGT ISISTAYSHE 240 LLSSLTQALQ NAGVDLSHAK LSVQIELGKR ANQGLTHNDP SNKNPFSSDI EGATRSRSGE 300 GESEHAHKRM KTL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.3002	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009105453.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189458	0.0	AC189458.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073F16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105453.1	0.0	PREDICTED: transcription factor BIM2
Swissprot	Q9CAA4	1e-163	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A397YZU8	0.0	A0A397YZU8_BRACM; Uncharacterized protein
STRING	Bra004355.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-154	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]