PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 359aa MW: 39934.7 Da PI: 8.8614 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.1 | 7.2e-32 | 213 | 268 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+++mkv+gLt+++vkSHLQkYRl+ XP_009105417.1 213 KQRRCWSPELHRRFLHALQQLGGSHAATPKQIRDHMKVDGLTNDEVKSHLQKYRLH 268 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.204 | 210 | 270 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-18 | 210 | 271 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-28 | 210 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-26 | 213 | 268 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-8 | 215 | 266 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MMVQKMEVDH AHKMQRCHEY VEALKEEQKK IQVFQRELPL CLELVTQAIE ACKKELSVTS 60 TTSEQYSEQT ASVCGGPVLE EFIPIKKSNN EENREHESPR EVDKSDVDSK KSDWLRSAHL 120 WNHHSQDPDM TVVVAKKARV VEVKPNSHNR GGFQPFQKEK KRVFSETDLH PAVKATTPAP 180 ATTTCSTTEV GGADKAGEEQ IQKQQLQTQT QRKQRRCWSP ELHRRFLHAL QQLGGSHAAT 240 PKQIRDHMKV DGLTNDEVKS HLQKYRLHTR RPATAQGNGN SQQPQFVVVG GIWVPSPQDF 300 PPPSDVANKG DGVYAQATAQ APVAPQSPKR SVERSSGRCN SPAASSSTNT TTTSASPVS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.26600 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phosphate homeostasis. Involved in the regulation of the developmental response of lateral roots, acquisition and/or mobilization of phosphate and expression of a subset of genes involved in phosphate sensing and signaling pathway. Is a target of the transcription factor PHR1. {ECO:0000269|PubMed:27016098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105417.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced under phosphate deprivation conditions. {ECO:0000269|PubMed:27016098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105417.1 | 0.0 | PREDICTED: myb family transcription factor EFM | ||||
Swissprot | Q8VZS3 | 1e-148 | HHO2_ARATH; Transcription factor HHO2 | ||||
TrEMBL | M4CJE6 | 0.0 | M4CJE6_BRARP; Uncharacterized protein | ||||
STRING | Bra004330.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3491 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68670.1 | 1e-106 | G2-like family protein |
Publications ? help Back to Top | |||
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