PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009105416.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 441aa    MW: 49720.8 Da    PI: 6.0246
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009105416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.9e-10152194342
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeN 42 
                     ++k  rr+++NReAAr+sR+RKka++++Le+   + ++Le+e 
  XP_009105416.1 152 QSKTLRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEEL 194
                     57899************************98333455555543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.5E-4150216IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186152196IPR004827Basic-leucine zipper domain
PfamPF001706.3E-7153194IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.97E-6154197No hitNo description
Gene3DG3DSA:1.20.5.1704.4E-7155199No hitNo description
PROSITE patternPS000360157172IPR004827Basic-leucine zipper domain
PfamPF141442.6E-27240313IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MQSSFKTVPF NPDFYSQASF FFRGDSCLDE FHQPINGFHH DEAVGLSPNV TVAASNNLHY  60
TTFDTVMDYG LRERLEGEDE CLDTGELMYQ RGTRLVGGGE VNSSLDKWCD SVSAMADNSQ  120
HTDTSTDIDT DDKSQLNGVN QGMLLATNCS DQSKTLRRLA QNREAARKSR LRKKAYVQQL  180
ENSRIRLAQL EEELKRARQQ QGCSVERGAS RENTHAPAGN GVFSFELEYA RWMEEHQRLI  240
NDLRAGVHSQ LGDNELRVLV DAVMSHYDEI FRLKGIGTKV DVFHMLSGMW QTPAERFFMW  300
LGGFRSSELL KILGNHVDPL TDQQLIGICN LQQSSQQAED ALSQGMEALQ QSLLETLSSA  360
SMGPNSSANV ADYMGHMAMA MGKLGTLENF LRQADLLRQQ TLQQLHRILT TRQAARAFLV  420
IHDYICRLRA LSSLWLARPR D
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269|PubMed:9990857}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269|PubMed:19395638, ECO:0000269|PubMed:19395639, ECO:0000269|PubMed:9990857}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009105416.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1182860.0AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBankBT0085860.0BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105416.10.0PREDICTED: transcription factor PERIANTHIA
SwissprotQ9SX270.0PAN_ARATH; Transcription factor PERIANTHIA
TrEMBLM4CJE50.0M4CJE5_BRARP; Uncharacterized protein
STRINGBra004329.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.10.0bZIP family protein
Publications ? help Back to Top
  1. Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU
    The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control.
    Front Plant Sci, 2011. 2: p. 79
    [PMID:22645551]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. de Luis Balaguer MA, et al.
    Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640
    [PMID:28827319]