PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105363.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 358aa MW: 40750 Da PI: 5.3992 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.4 | 9.1e-31 | 229 | 288 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ XP_009105363.1 229 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 288 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-33 | 214 | 290 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-28 | 222 | 290 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.023 | 224 | 290 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 229 | 289 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-27 | 230 | 288 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MEFDFSSSKS KSNKQXTEVC FSSPLIDMDL SLRLEKEKDE ERSKHSCEKE EEDDDEASED 60 KDEQMVKEDE TEDSLLSSKS RKEENEREEL LQMQIEMEHV KEENMRLRKL VEQTLQDYRQ 120 LEMKFPVIDQ TDKMDLETFL GAQAKARKRG VERSASLPSV EGELGLSLSL QKKQKREEGK 180 AAESHNTQRY NSSSTIQGQD INTQRVITSS PGNRKARVSV RARCETATMN DGCQWRKYGQ 240 KTAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT YEGTHNHPLP VGATAMASTA 300 STSSFLLLDS SDNLSHPSYF QQNGNDNRSI RSLINFDDPS SRGGDHVSSS QNRLNWMM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-23 | 216 | 292 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105363.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430032 | 0.0 | KF430032.1 Brassica rapa WRKY transcription factor 9 (WRKY9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590991.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 9 | ||||
Swissprot | Q9C9F0 | 1e-168 | WRKY9_ARATH; Probable WRKY transcription factor 9 | ||||
TrEMBL | A0A3P6BRV8 | 0.0 | A0A3P6BRV8_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | Bra004285.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6736 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 1e-127 | WRKY DNA-binding protein 9 |