PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009105062.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 413aa MW: 46180.8 Da PI: 8.7435 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.8e-06 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_009105062.1 69 YVCEICNQGFQRDQNLQMHRRRH 91 9*********************9 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00018 | 148 | 169 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ XP_009105062.1 148 ICERCSKGYAVQSDYKAHLKTC 169 7*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.98E-5 | 66 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.02 | 69 | 87 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 111 | 141 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 110 | 147 | 174 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF09596 | 1.6E-4 | 184 | 219 | IPR019082 | Neurogenic mastermind-like, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007219 | Biological Process | Notch signaling pathway | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MIDYERSNNT KNINHHRNPP PSSSSSDLLP DGNGAAVTQK RKRRPAGTPD PEAEVVSLSP 60 RTLLESDRYV CEICNQGFQR DQNLQMHRRR HKVPWKLLKR ETNEEVKKRV YVCPEPTCLH 120 HNPCHALGDL VGIKKHFRRK HSNHKQWICE RCSKGYAVQS DYKAHLKTCG TRGHSCDCGR 180 VFSRVESFIE HQDNCTMRQP QPSSHRLQQQ QQHTANAAQT ASTAENIDLN IGPVLPGHPL 240 LRQSPPSDQQ PSDLLYPFVG SSASTGSGIE LQLLPSRASA DGTSLSLSIG MDTTMSSYEK 300 GETSLLLGER EEAKRQIEIA ELEYAEAKRI RQHARGELHK AQLYREEARR RISATIMQIT 360 CHNCKKHFQA VAASSPSPRL PQPPCTDEST SLAVSYVSSA TTEGEKASDR ASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-17 | 145 | 195 | 5 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 1e-17 | 145 | 195 | 5 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009105062.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189489 | 0.0 | AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105062.1 | 0.0 | PREDICTED: protein indeterminate-domain 14-like | ||||
Refseq | XP_022544774.1 | 0.0 | protein indeterminate-domain 14 | ||||
Swissprot | Q9C9X7 | 0.0 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | A0A078EZ84 | 0.0 | A0A078EZ84_BRANA; BnaA07g24790D protein | ||||
TrEMBL | A0A397YPQ5 | 0.0 | A0A397YPQ5_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CIL6 | 0.0 | M4CIL6_BRARP; Uncharacterized protein | ||||
STRING | Bra004050.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 0.0 | indeterminate(ID)-domain 14 |
Publications ? help Back to Top | |||
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