PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_009104996.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 280aa MW: 32252.2 Da PI: 5.3604

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009104996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33.4	1e-10	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+++gLtl+h+kSHLQkYRl XP_009104996.1 1 MKAMEIPGLTLYHLKSHLQKYRL 23 799*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-9	1	23	IPR009057	Homeodomain-like
Pfam	PF14379	1.7E-19	71	118	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MKAMEIPGLT LYHLKSHLQK YRLGKSLKFD DNRLEVSSAL ETQEAESGNY SRDFRGSVNE 60 ENNNPANEGL KITEALQLQT EVQKKLHEQI EVVQRNLQVK IEAQGKYLQS VLMKAQQTLA 120 GYTSSTLGMD FSRTKLSRFA SLVNPSSSFS ELTQVEEYEE EAEDARESFL YRKKTENRGI 180 KLLRCSVESF LESSESSETK RNNDNDERIS VELPLMEIKS EVMTNKKKRN HNDVVCMECQ 240 LLKKIDFEVD DDEQELKLSL NSYKKNYGDV PEPKKRLGFN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009104996.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104994.1	0.0	PREDICTED: myb family transcription factor PHL8-like isoform X1
Swissprot	F4I274	1e-114	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	M4CIF9	0.0	M4CIF9_BRARP; Uncharacterized protein
STRING	Bra003993.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-114	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]