PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009104995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 338aa MW: 38659.6 Da PI: 6.7926 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 1.9e-32 | 29 | 82 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prl+Wt+eLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl XP_009104995.1 29 PRLKWTCELHHRFVEAVNQLGGPNKATPKSLMKAMEIPGLTLYHLKSHLQKYRL 82 9****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-28 | 26 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-15 | 27 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-22 | 28 | 83 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.8E-7 | 30 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.0E-21 | 130 | 176 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MCLLMASNTN NGNNQKTKMS LVLSTDANPR LKWTCELHHR FVEAVNQLGG PNKATPKSLM 60 KAMEIPGLTL YHLKSHLQKY RLGKSLKFDD NRLEVSSALE TQEAESGNYS RDFRGSVNEE 120 NNNPANEGLK ITEALQLQTE VQKKLHEQIE VQRNLQVKIE AQGKYLQSVL MKAQQTLAGY 180 TSSTLGMDFS RTKLSRFASL VNPSSSFSEL TQVEEYEEEA EDARESFLYR KKTENRGIKL 240 LRCSVESFLE SSESSETKRN NDNDERISVE LPLMEIKSEV MTNKKKRNHN DVVCMECQLL 300 KKIDFEVDDD EQELKLSLNS YKKNYGDVPE PKKRLGFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-18 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-18 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-18 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-18 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-18 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-18 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-18 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-18 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009104995.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104995.1 | 0.0 | PREDICTED: myb family transcription factor PHL8-like isoform X2 | ||||
Swissprot | F4I274 | 1e-150 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A3P6BJM7 | 0.0 | A0A3P6BJM7_BRACM; Uncharacterized protein | ||||
STRING | Bra003993.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 1e-150 | G2-like family protein |
Publications ? help Back to Top | |||
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