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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009104936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 378aa MW: 41490.6 Da PI: 6.5975 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.3 | 1e-06 | 274 | 312 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + L++l+ + +K + a++L++A+eYIk L XP_009104936.1 274 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 312 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.782 | 263 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-11 | 273 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.36E-6 | 273 | 316 | No hit | No description |
SMART | SM00353 | 0.0071 | 273 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-9 | 277 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MADEFQATAA ICGSGGGAWW SSPRSVMSPS DHFLSPYFGA TITSDDFGFQ ENNIKSRNTC 60 TDNNIISGQR EADSDSGGST VTIDSTMQMM GLGFSSNSSS DWNHTILQED LNSSFLRSSQ 120 NHGQGFSSTT ASPYLLNPAC SSTSSSSSLL RTFYDPEPNP YSFVSTTSCS LNNPHASWAN 180 KKINPNHQAS YGLINNFSDN TNSLPFWSSS LTTNLNNTTH NSYVTTPLII PPRVDDKTKK 240 TRGQSESLKR GKYNEPASKK QRVTTPSPLP NFKVRKENLR DQITSLQQLV SPFGKTDTAS 300 VLQEAIEYIK FLHDQVTVLS TPYMKQGAPI HQQQQDGNDN QELRAHGLCL VPISSTFPVA 360 NETTADFWTP TFGGNNFR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.26892 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009104936.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104922.1 | 0.0 | PREDICTED: transcription factor bHLH112 isoform X1 | ||||
Swissprot | Q94JL3 | 0.0 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | M4ERI8 | 0.0 | M4ERI8_BRARP; Uncharacterized protein | ||||
STRING | Bra031413.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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