PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 378aa MW: 41490.6 Da PI: 6.5975

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009104936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.3	1e-06	274	312	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++++ + L++l+ + +K + a++L++A+eYIk L XP_009104936.1 274 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 312 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.782	263	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-11	273	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-6	273	316	No hit	No description
SMART	SM00353	0.0071	273	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-9	277	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MADEFQATAA ICGSGGGAWW SSPRSVMSPS DHFLSPYFGA TITSDDFGFQ ENNIKSRNTC 60 TDNNIISGQR EADSDSGGST VTIDSTMQMM GLGFSSNSSS DWNHTILQED LNSSFLRSSQ 120 NHGQGFSSTT ASPYLLNPAC SSTSSSSSLL RTFYDPEPNP YSFVSTTSCS LNNPHASWAN 180 KKINPNHQAS YGLINNFSDN TNSLPFWSSS LTTNLNNTTH NSYVTTPLII PPRVDDKTKK 240 TRGQSESLKR GKYNEPASKK QRVTTPSPLP NFKVRKENLR DQITSLQQLV SPFGKTDTAS 300 VLQEAIEYIK FLHDQVTVLS TPYMKQGAPI HQQQQDGNDN QELRAHGLCL VPISSTFPVA 360 NETTADFWTP TFGGNNFR

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MADEFQATAA ICGSGGGAWW SSPRSVMSPS DHFLSPYFGA TITSDDFGFQ ENNIKSRNTC  60
TDNNIISGQR EADSDSGGST VTIDSTMQMM GLGFSSNSSS DWNHTILQED LNSSFLRSSQ  120
NHGQGFSSTT ASPYLLNPAC SSTSSSSSLL RTFYDPEPNP YSFVSTTSCS LNNPHASWAN  180
KKINPNHQAS YGLINNFSDN TNSLPFWSSS LTTNLNNTTH NSYVTTPLII PPRVDDKTKK  240
TRGQSESLKR GKYNEPASKK QRVTTPSPLP NFKVRKENLR DQITSLQQLV SPFGKTDTAS  300
VLQEAIEYIK FLHDQVTVLS TPYMKQGAPI HQQQQDGNDN QELRAHGLCL VPISSTFPVA  360
NETTADFWTP TFGGNNFR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.26892	0.0	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009104936.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104922.1	0.0	PREDICTED: transcription factor bHLH112 isoform X1
Swissprot	Q94JL3	0.0	BH112_ARATH; Transcription factor bHLH112
TrEMBL	M4ERI8	0.0	M4ERI8_BRARP; Uncharacterized protein
STRING	Bra031413.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]