PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104927.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 395aa    MW: 43600 Da    PI: 7.0998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-062733111154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  XP_009104927.1 273 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 311
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.782262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-6272315No hitNo description
SuperFamilySSF474591.83E-11272329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0071272317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-9276319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MADEFQATAA ICGSGGGAWW SSPRSVMSPS DHFLSPYFGA TITSDDFGFQ ENNIKSRNTC  60
TDNNIISGQR EADSDSGGST VTIDSTMQMM GLGFSSNSSS DWNHTILQED LNSSFLRSSQ  120
NHGQGFSSTT ASPYLLNPAC SSTSSSSSLL RTFYDPEPNP YSFVSTTSCS LNNPHASWAN  180
KKINPNHQAS YGLINNFSDN TNSLPFWSSS LTTNLNNTTH NSYVTTPLII PPRVDDKTKT  240
RGQSESLKRG KYNEPASKKQ RVTTPSPLPN FKVRKENLRD QITSLQQLVS PFGKTDTASV  300
LQEAIEYIKF LHDQVTVLST PYMKQGAPIH QQQQDGNDNQ ELRAHGLCLV PISSTFPVAN  360
ETTADFWTPT FGGNNFRKIK FASHDQRLNH YLEKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.268920.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104927.10.0PREDICTED: transcription factor bHLH112 isoform X2
SwissprotQ94JL30.0BH112_ARATH; Transcription factor bHLH112
TrEMBLM4ERI80.0M4ERI8_BRARP; Uncharacterized protein
STRINGBra031413.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]