PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104842.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 317aa    MW: 35155.1 Da    PI: 9.5375
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.4e-32154209258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ep++VNaKQyq+I++RR++Rakle+++kl +ksrkpylheSRh hAl+RpRgsgGrF
  XP_009104842.1 154 EPVFVNAKQYQAIMRRRKQRAKLEAQNKL-IKSRKPYLHESRHVHALKRPRGSGGRF 209
                     8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-37151212IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.782152212IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.8E-27154209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-22155177IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860157177IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-22186209IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MHQMNKKDST LPYLNTSISW GGVDARPEHM QTTKQISFQD LDSPSSQSTC QSYTEVASSG  60
DDNPSIQISF STKSGSEETQ QKGFATHPNS GSVTGVHSIH FAPMQANFSF QYADPHTGGL  120
LAATYLAHAP TCHPQMVGMV PRRVPLPVEI TEAEPVFVNA KQYQAIMRRR KQRAKLEAQN  180
KLIKSRKPYL HESRHVHALK RPRGSGGRFL NTKQLLQESE QAAAKKQEHD KSVQQESKKA  240
NMSRFEAHHT LQHNKDRGST TSGSDITSVS DGADIFGHTE FQFSGFPTTQ TNRAMLVHGQ  300
SNDMHGGGDL HHFTVHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18154214363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171MRRRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104842.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
SwissprotQ93ZH21e-179NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A3P6BEG60.0A0A3P6BEG6_BRACM; Uncharacterized protein
TrEMBLM4CI340.0M4CI34_BRARP; Uncharacterized protein
STRINGBra003867.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.10.0nuclear factor Y, subunit A3