 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009104708.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
bZIP |
| Protein Properties |
Length: 179aa MW: 19473.5 Da PI: 5.617 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009104708.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 41.2 | 3.7e-13 | 38 | 96 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
++ +rkq+NRe+ArrsR RK++ ++ L+ v L +eN + + ++++ ++++e+
XP_009104708.1 38 RKRKRKQSNRESARRSRMRKQQHLDDLAAQVTHLRKENGHFIAGIAVTTEHYVTMEAEN 96
5789**********************************998888887777777777665 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009845 | Biological Process | seed germination |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 179 aa
Download sequence Send
to blast |
MNKTELGSPT SNSSVSTTGL LNSGSETDLQ QRDLLDERKR KRKQSNRESA RRSRMRKQQH 60
LDDLAAQVTH LRKENGHFIA GIAVTTEHYV TMEAENSILR AQLLELNHRL DSLNEIVDFV 120
ESSSFEMETG QGGGLVDYGG GGGGGGGGFY DGVMNTLNLG FYNQPIMASA STAGDVFNC
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 37 | 42 | RKRKRK |
| 2 | 50 | 57 | RRSRMRKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC023754 | 5e-31 | AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence. |
| GenBank | AK318829 | 5e-31 | AK318829.1 Arabidopsis thaliana AT1G75390 mRNA, complete cds, clone: RAFL14-51-H21. |
| GenBank | AK318991 | 5e-31 | AK318991.1 Arabidopsis thaliana AT1G75390 mRNA, complete cds, clone: RAFL21-81-N15. |
| GenBank | BT004768 | 5e-31 | BT004768.1 Arabidopsis thaliana At1g75390 gene, complete cds. |
| GenBank | CP002684 | 5e-31 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
