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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009104702.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
SRS |
| Protein Properties |
Length: 331aa MW: 36629.3 Da PI: 7.6014 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009104702.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 225.1 | 1.4e-69 | 102 | 267 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..........kskkqsal 86
r+g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a s++++++kr re +s ++ ++
XP_009104702.1 102 RQGSMNCQDCGNQAKKDCSHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHRSAFSRETQKAKRLREAngggdnvdkdHSGSAGSA 196
7899***********************************************************99999999999988899999887667777888 PP
DUF702 87 sstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
+t++++a+s++ +e+s+ lP+evss+avfrcvrv+s+++ +++e+aYqtav+igGh+fkGiLydqG+e+
XP_009104702.1 197 IATRVANANSNSGFEVSQnLPPEVSSPAVFRCVRVNSIEEdeDDQEYAYQTAVNIGGHIFKGILYDQGPEQ 267
999**********998877*******************88535567***********************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MAGFFYLGGR DNNKQDLHQV DKSSYLYLYK DEIYNTNKGF EIWPPQYFQE QHQQHVTAPA 60
NFYSFGMVPS GSSSNNNNNN RSRSLHFNVV SDHEPGGFTV TRQGSMNCQD CGNQAKKDCS 120
HMRCRTCCKS RGFHCQTHVK STWVPAAKRR ERLAQLASLQ HRSAFSRETQ KAKRLREANG 180
GGDNVDKDHS GSAGSAIATR VANANSNSGF EVSQNLPPEV SSPAVFRCVR VNSIEEDEDD 240
QEYAYQTAVN IGGHIFKGIL YDQGPEQDHH HQLNLLAPTA TTTNAEETAA KTAVTVAGNN 300
NTGLILDPSS LYPVQLSSYI SGTPFFTPPR S
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU205267 | 0.0 | GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds. |
