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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009104654.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
Trihelix |
Protein Properties |
Length: 613aa MW: 69073.6 Da PI: 6.6277 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009104654.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 91.3 | 1e-28 | 53 | 137 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g+ r++k+Ckek+en+ k++k++keg+ ++++++ t+++fdqlea
XP_009104654.1 53 RWPRQETLALLKIRSDMGIAFRDSSVKGPLWEEVSRKMAELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 137
8********************************************************************975544..6*******85 PP
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2 | trihelix | 104.2 | 9.6e-33 | 408 | 493 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k e+ aLi++r++++++++++ k+plWee+s+ m++ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
XP_009104654.1 408 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMKRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 493
8*********************************************************************8.99***********85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 613 aa
Download sequence Send
to blast |
MMQLGGTTTT AVTSATPPPS NDSAATEAAA AAATVGAFEV SEEMNDRGFG GNRWPRQETL 60 ALLKIRSDMG IAFRDSSVKG PLWEEVSRKM AELGYIRNAK KCKEKFENVY KYHKRTKEGR 120 TGKSEGKTYR FFDQLEALET RPTSSSLHHQ QQQQPPPQTQ PQPLQPQPPL RPHNNNSSMF 180 PTPPPVTTIT PQITNTTLPP YTQPVNVPSF PNISGDFLSD DSTSSSHSTS SDVEVGDGTT 240 MTRKKKRKRK WKEFFERLTR QVVDKQEELQ RKFLEAVEKR EHERLVREES WRVQEIARIN 300 RERDILAQER SMSAAKDAAV MAFLQKLSEK PNPQGQSIPQ QQPQPQQPPS QMQVNNNNNQ 360 QTPQPPPPPI SQPTQPVTPT VDTSKTDNGD QNMTPVSASA AGALSSSRWP KVEIEALIKL 420 RTNLDSKYQE NGPKGPLWEE ISAGMKRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE 480 DSKTCPYFHQ LDALYRERNK FHTSNNVIAS SSSTSGLVKP DNSVPLMVQP EQQWPPAMAT 540 TTMTSTVAAT AQPDQHPPPQ PLDKNFDDEE GTDGEEYDEE EDYEENEEEE GGEFELVPSN 600 NNNNNNNKPT NNM
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 243 | 249 | KKKRKRK |
2 | 244 | 249 | KKRKRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189203 | 0.0 | AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence. |