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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009104653.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
Trihelix |
Protein Properties |
Length: 546aa MW: 62679.3 Da PI: 9.1024 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009104653.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 94.3 | 1.2e-29 | 42 | 126 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++ e+laL+++r+ m++++r++ lk+ lWee+s+km+e g++rs+k+Ckek+en+ k++k++k+g+ ++++++ t+++fd+lea
XP_009104653.1 42 RWPRPETLALLRIRSVMDKTFRDSTLKASLWEEISRKMMELGYKRSSKKCKEKFENVYKYHKRTKDGRTGKSKGN--TYRFFDELEA 126
8********************************************************************975555..6******985 PP
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2 | trihelix | 96.4 | 2.5e-30 | 374 | 459 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev aLi++r+++e ++ ++ k+plWee+s+ +r+ g++rs k+Ckekwen+nk++kk+ke++k+r + +s+tcp f+qlea
XP_009104653.1 374 RWPKTEVEALIRIRKNLEANYLENGTKGPLWEEISAEIRRFGYNRSTKRCKEKWENINKYFKKVKESNKRR-PLDSKTCPCFHQLEA 459
8********************************************************************97.9************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 546 aa
Download sequence Send
to blast |
MSGNSSELLD SSGDGGLGGS GEEEKDMKME KTGEACGGRG NRWPRPETLA LLRIRSVMDK 60 TFRDSTLKAS LWEEISRKMM ELGYKRSSKK CKEKFENVYK YHKRTKDGRT GKSKGNTYRF 120 FDELEAFETI NSYPPGSKFQ PAKPPAAAAT TTRQMFHLDV PKTASNQQVS VKPITTNPTF 180 LAKQPSLTTH FPFYNNNHST KVDDTGFKPT SSDLLNNVSS LNLFSRSTSS SDEEEDQEKR 240 SRKKRKLTKE LMEKQEKMHK RFLKALETGE RERISREEAW RVQEVERINS EHNTLVHERS 300 NIAAKDVAII SFLQKISGGQ QQPHQQNYKV SQRKQYQSEQ HSITFESEET SQVVLDTTIM 360 KIGTSNXASP SSSRWPKTEV EALIRIRKNL EANYLENGTK GPLWEEISAE IRRFGYNRST 420 KRCKEKWENI NKYFKKVKES NKRRPLDSKT CPCFHQLEAL YNERNKTGPL PILPLLVNXR 480 QFLLSQETKA EXTNQRDKVD NKEGESGEDD YEDEEEEGAG DNEISEFEIV LNKTSSPMDI 540 NNNLFT
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189203 | 0.0 | AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence. |