PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009104596.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 374aa MW: 42314.5 Da PI: 6.6552

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009104596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.2	3.2e-12	88	138	4	54
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +k rr+++NReAAr+sR+RKka++++Lee +L++ ++L k ++ +k XP_009104596.1 88 DKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQELEKAKQQVSK 138 7999**************************999999999877766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-8	80	137	No hit	No description
SMART	SM00338	2.9E-5	80	138	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.553	87	138	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-8	88	139	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.44E-7	89	135	No hit	No description
PROSITE pattern	PS00036	0	92	107	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-28	176	250	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MMSSTSPTQL ASLRDMGIYE PFQQMVSWGN VFKSDINDHS PNTASSSVIQ VDHNIIKASY 60 PSSSHNQIEA EPSSNDHQEE DDDGRNHDKM KRRLAQNREA ARKSRLRKKA YVQQLEESRL 120 KLSQLEQELE KAKQQVSKGI YSSGSSYVGS SGSINSSIAA FELEYSHWLE EQSRRVSEIR 180 TALQAHISDI ELKMLVESCL NHYANLFRMK ADAAKADVFY LISGMWRTST ERFFQWIGGF 240 RPSGLLNVVM PYLQPLTDQQ ILEVRNLQQS SQQAEDALSQ GIDKLQQSLA DNIVIDVVMD 300 SNDYPSHMGA AVENLQALEG FVNQADHLRQ QTLQQMAKIL TTRQAARGLL CLGEYLHRLR 360 ALSSLWAARP REHA

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MMSSTSPTQL ASLRDMGIYE PFQQMVSWGN VFKSDINDHS PNTASSSVIQ VDHNIIKASY  60
PSSSHNQIEA EPSSNDHQEE DDDGRNHDKM KRRLAQNREA ARKSRLRKKA YVQQLEESRL  120
KLSQLEQELE KAKQQVSKGI YSSGSSYVGS SGSINSSIAA FELEYSHWLE EQSRRVSEIR  180
TALQAHISDI ELKMLVESCL NHYANLFRMK ADAAKADVFY LISGMWRTST ERFFQWIGGF  240
RPSGLLNVVM PYLQPLTDQQ ILEVRNLQQS SQQAEDALSQ GIDKLQQSLA DNIVIDVVMD  300
SNDYPSHMGA AVENLQALEG FVNQADHLRQ QTLQQMAKIL TTRQAARGLL CLGEYLHRLR  360
ALSSLWAARP REHA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009104596.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353384	0.0	AK353384.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-N08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104596.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Refseq	XP_013648665.1	0.0	transcription factor TGA7-like isoform X1
Swissprot	Q93ZE2	0.0	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A3N6THZ5	0.0	A0A3N6THZ5_BRACR; Uncharacterized protein
STRING	XP_010416756.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]