PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104568.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 288aa    MW: 31361.7 Da    PI: 6.5527
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.91.3e-05447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e  e+   C  ++  lC  C ++ H        H++vpl
  XP_009104568.1  4 QCNVCETAEAAVLCCADEAALCLACDEKVHTAnklagkHQRVPL 47
                    7******99*********************66899999999986 PP
2zf-B_box25.42.9e-085390237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg...H 37
                    +++kC+ ++e    +fC +++ llC++C +++H     H
  XP_009104568.1 53 SKPKCDICQEATGFFFCLQDRALLCRKCDVAIH-TvnpH 90
                    679*******9999******************9.33452 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000211.27E-6347No hitNo description
SMARTSM003365.0E-9447IPR000315B-box-type zinc finger
SMARTSM003361.0E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501198.8165299IPR000315B-box-type zinc finger
PfamPF006434.0E-65389IPR000315B-box-type zinc finger
CDDcd000211.15E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKIQCNVCET AEAAVLCCAD EAALCLACDE KVHTANKLAG KHQRVPLSVS SSSKPKCDIC  60
QEATGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT GIRVGLESTT DTGPSTPSND  120
DKTNERKPPT SEPQKLDLDH HNHQVGLPET KVSDHISTKL PIASSGSAAT GSISQWQIDE  180
IFGLTDFDQS YEYMENNGSS KADTSRRGDS DSSSMMRSGE EDGEDNSNCL GGGETSWAVP  240
QIHSPPTASG LNWPRHFNHH SMFVPHLSSS THNTGSSPNQ RVGKRRRF
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104568.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324450.0AC232445.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006F18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104568.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM21e-154BBX22_ARATH; B-box zinc finger protein 22
TrEMBLM4CHF70.0M4CHF7_BRARP; Uncharacterized protein
STRINGBra003640.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-122light-regulated zinc finger protein 1