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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009104516.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 357aa MW: 41247.4 Da PI: 7.2794 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009104516.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 164.7 | 3.4e-51 | 17 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
+ppGfrFhPt+eel+ +yLkkkv+ ++++l +vi+evd++k+ePw+L++ ++ + ++ewyfFs++dkky+tg r+nrat++g+Wkatg+dk++
XP_009104516.1 17 VPPGFRFHPTEEELLYYYLKKKVSYEPTDL-DVIREVDLNKLEPWELKEkcRIGSgPQNEWYFFSHKDKKYPTGIRTNRATAAGFWKATGRDKSI 110
69*************************999.9***************952444443456************************************ PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++++++gl+ktLvfy+gr p+g+kt+W+mheyrl
XP_009104516.1 111 HLNSSKKIGLRKTLVFYTGRVPHGHKTEWIMHEYRL 146
**********************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0003002 | Biological Process | regionalization |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
GO:0010455 | Biological Process | positive regulation of cell fate commitment |
GO:0048829 | Biological Process | root cap development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPTDLDVIR EVDLNKLEPW 60 ELKEKCRIGS GPQNEWYFFS HKDKKYPTGI RTNRATAAGF WKATGRDKSI HLNSSKKIGL 120 RKTLVFYTGR VPHGHKTEWI MHEYRLDDNE NEIQEDGWVV CRVFKKKNHF RGFHQEQDQD 180 HHHDHQYIST NNDDHQQQHH NESNPNNHSS LISHSLDHHQ NHHHMGRQIH MPLHEFANTL 240 SHGSMHLPQL FSPDSAQPFV SSINTTDIEC SQNLLRLTSN NNYGGDWSFL DKLLTTTNMN 300 HQQQQQVQNH QAKCFGDSSN NDQAVTHDNG GSSSSPNNQR FPFHYLGNNA NLLKFPK
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 9e-49 | 14 | 168 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-49 | 14 | 168 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-49 | 14 | 168 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-49 | 14 | 168 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-48 | 14 | 168 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 14 | 168 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 14 | 168 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 14 | 168 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 14 | 168 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 14 | 168 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 14 | 168 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 14 | 168 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-49 | 14 | 168 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-49 | 14 | 168 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: First expressed at early heart stage onward in all root basal daughter cells resulting from horizontal divisions in the COL progenitors and is later maintained in these cells. Present in root stem cell daughters and accumulates in maturing root cap layers. Detectable from very early stages of lateral root development. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Uniprot | TISSUE SPECIFICITY: Accumulates in maturing root cap cells, in both COL and LRC cells. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC010793 | 1e-104 | AC010793.3 Genomic sequence for Arabidopsis thaliana BAC F20B17 from chromosome I, complete sequence. |
GenBank | CP002684 | 1e-104 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Publications
? help Back to Top |
- Fendrych M, et al.
Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] - Bennett T,van den Toorn A,Willemsen V,Scheres B
Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] - Karve R,Suárez-Román F,Iyer-Pascuzzi AS
The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] - Kamiya M, et al.
Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]
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