PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104482.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 226aa    MW: 25083.2 Da    PI: 10.3671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00026890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C++ F ++  L  H++ H
  XP_009104482.1 68 FSCNYCKRKFYSSQALGGHQNAH 90
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-66595No hitNo description
PROSITE profilePS5015711.4066895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNPSFKGDQE MLKTKKQGHQ DLELGLNLLP SATTSSELNL MDSFKTSSSS TSHHHGNHQE  60
HLEDPRVFSC NYCKRKFYSS QALGGHQNAH KRERTLAKRG QYYKMSLSSS SPSSAFAFGH  120
GSVSRFASMA SLQLHGSANN RSTLGIQAHS ASHNPLLGRQ TASLSHVFKH TIHQKPGTGK  180
MLPEKFHLEV ASSNNTIAPK LEMIGHFKSK EEDNNQFKKI DLTLKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in the shoot apex, including the apical meristem, developing leaves and developing vascular system. {ECO:0000269|PubMed:10794528, ECO:0000305|PubMed:8980531}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104482.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324760.0AC232476.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104482.11e-166PREDICTED: zinc finger protein 1-like
SwissprotQ424851e-119ZFP1_ARATH; Zinc finger protein 1
TrEMBLM4CH991e-156M4CH99_BRARP; Uncharacterized protein
STRINGBra003582.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM118581628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-115zinc-finger protein 1
Publications ? help Back to Top
  1. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]