PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009104362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 36780.5 Da PI: 5.2734 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.7 | 1e-08 | 166 | 210 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n E++ R++iN+++ +L+ llP++ +K + ++L +A++Y+ Lq XP_009104362.1 166 NSSEKNQRSDINKKMRKLQNLLPNS-----GKDDNESTLDEAINYMTTLQ 210 678*********************9.....9***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.53E-7 | 155 | 214 | No hit | No description |
PROSITE profile | PS50888 | 12.176 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-13 | 164 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-5 | 166 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-9 | 166 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-7 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MMFVLTKLIY CSCRLKDQEY MELVFENGQF LAKSQRSKAF SLENQRTKSI VDLYEDEYNE 60 DFMKSIIHGA DKKLQSLKAS SSKKMVVDYE NRKDNEFIPP DEQSVVAERS VELGFDSTEF 120 TEDSEGSTYL SSSLDDESDD PRPRVPARTR KSLVKRRRSN SNELYNSSEK NQRSDINKKM 180 RKLQNLLPNS GKDDNESTLD EAINYMTTLQ LQVQMMTMSN RFAAPAMMLP LGPHYSQMGL 240 PTCMQMGLPQ FLPPPVLGSG GNSADMLRFL NHPTGLITPM QNSALFTPMG NYFPPSCAAF 300 PNQIQNSTSL SNLDDATTDG GSLSGKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.24337 | 0.0 | root| silique |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009104362.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104362.1 | 0.0 | PREDICTED: transcription factor PIF6-like isoform X3 | ||||
Swissprot | Q8L5W7 | 1e-138 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | A0A397YPI1 | 0.0 | A0A397YPI1_BRACM; Uncharacterized protein | ||||
STRING | Bra003483.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62090.2 | 1e-132 | phytochrome interacting factor 3-like 2 |