PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009104361.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 39713.8 Da PI: 6.0712 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 192 | 236 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 n E++ R++iN+++ +L+ llP++ +K + ++L +A++Y+ Lq XP_009104361.1 192 NSSEKNQRSDINKKMRKLQNLLPNS-----GKDDNESTLDEAINYMTTLQ 236 678*********************9.....9***************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.74E-7 | 181 | 240 | No hit | No description |
PROSITE profile | PS50888 | 12.176 | 186 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.24E-13 | 190 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-7 | 192 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-9 | 192 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 192 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MTSPSPSTFR PKLKDQEYME LVFENGQFLA KSQRSKAFSL ENQRTKSIVD LYEDEYNEDF 60 MKSIIHGADK KLQVCSRNIM FFIVAAYETK MLMNHHLNLV QSLKASSSKK MVVDYENRKD 120 NEFIPPDEQS VVAERSVELG FDSTEFTEDS EGSTYLSSSL DDESDDPRPR VPARTRKSLV 180 KRRRSNSNEL YNSSEKNQRS DINKKMRKLQ NLLPNSGKDD NESTLDEAIN YMTTLQLQVQ 240 MMTMSNRFAA PAMMLPLGPH YSQMGLPTCM QMGLPQFLPP PVLGSGGNSA DMLRFLNHPT 300 GLITPMQNSA LFTPMGNYFP PSCAAFPNQI QNSTSLSNLD DATTDGGSLS GKK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bra.24337 | 0.0 | root| silique |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009104361.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104361.1 | 0.0 | PREDICTED: transcription factor PIF6-like isoform X2 | ||||
Swissprot | Q8L5W7 | 1e-142 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | A0A3P6BGS4 | 0.0 | A0A3P6BGS4_BRACM; Uncharacterized protein | ||||
STRING | Bra003483.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G62090.2 | 1e-144 | phytochrome interacting factor 3-like 2 |