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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009104354.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
NAC |
Protein Properties |
Length: 336aa MW: 38456.2 Da PI: 5.8438 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009104354.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 165.3 | 2.2e-51 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
+ppGfrFhPt+eel+ +yL+kk+++ k++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat+ g+Wkatg+dk +
XP_009104354.1 11 VPPGFRFHPTEEELLEYYLRKKISNIKIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKATGRDKII 104
69****************************.9***************962433332455************************************ PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+s +g +g++ktLvfykgrap+g+k+dW+mheyrl
XP_009104354.1 105 YS-NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
**.9999***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MNISVNGQSQ VPPGFRFHPT EEELLEYYLR KKISNIKIDL DVIRDVDLNK LEPWDIQEMC 60 KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT TVGFWKATGR DKIIYSNGDR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD ENVLASSSNH DDEVSVETCE VIGGDEGWVV CRVFMKKSLC 180 KTVISSPPRS VKTSSFNEET IEEIFKVMGQ SCKEEIIVDP FLKLPNLECL NNTVASYQRL 240 MDDQVHNYHV PSFGTSWVTL DRLVASQPNG PNSYSIPAVD EIPQSPLHGL NRPGLYNTGL 300 TQDYYTTEMD IWNNTDFGRT TTSSSNPWFH ISNSSE
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-47 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 8 | 178 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-47 | 8 | 178 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-47 | 8 | 178 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 8 | 178 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Mostly expressed in anthers. Also present in pollen, base of siliques and inflorescence stems. {ECO:0000269|PubMed:16214898}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}. |