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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009104251.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
BBR-BPC |
| Protein Properties |
Length: 341aa MW: 38028.1 Da PI: 9.6386 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009104251.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 387.4 | 2.2e-118 | 1 | 341 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88
mdd g+r+ r+k+ + + ++ +s+ +q+ms+iaerda+i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l al+++e
XP_009104251.1 1 MDDGGHRDngRHKApQGQwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISERKSAVAERDMAFLQRDTAIAERNNAIMERDSALSALQYRE 90
999999888888873211222222444.....5************************************************************** PP
GAGA_bind 89 nsla.........salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkk.rqrakkpkekkakkkkk 169
ns+a a+p+g+q+ +g+k+i++ q++++ ql+d+a++ e+++++ lp++ + +a +++k+k+ ++r k+pk+++++ ++k
XP_009104251.1 91 NSMAtpsavsnmaAACPPGCQMPRGVKHIHHPQMHQHqhhmLQLSDHAYD--ESREMDGLPTSPPPGTALDSAKPKRgGKRVKDPKATTKTTANK 183
**999*****99999*****************996665778899999999..55556678888888888777776652699************** PP
GAGA_bind 170 ksekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239
+++k+ +kvkke++d+ sk+++ks+++ +ln+v +De+t+P+PvCsCtG lrqCYkWGnGGWqS+CCttti
XP_009104251.1 184 RGPKNPRKVKKENEDDLtkimfvkttldygeeetsklvltgSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGDLRQCYKWGNGGWQSSCCTTTI 278
***********99883358********************************88****************************************** PP
GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
XP_009104251.1 279 SMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 341
*************************************88***********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MDDGGHRDNG RHKAPQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE RKSAVAERDM 60
AFLQRDTAIA ERNNAIMERD SALSALQYRE NSMATPSAVS NMAAACPPGC QMPRGVKHIH 120
HPQMHQHQHH MLQLSDHAYD ESREMDGLPT SPPPGTALDS AKPKRGGKRV KDPKATTKTT 180
ANKRGPKNPR KVKKENEDDL TKIMFVKTTL DYGEEETSKL VLTGSKSDWK SQEMVGLNQV 240
VYDETTMPPP VCSCTGDLRQ CYKWGNGGWQ SSCCTTTISM YPLPALPNKR HARVGGRKMS 300
GSAFNKLLSR LAAEGHHDLS NPVDLKDHWA KHGTNRYITI K
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF529514 | 0.0 | EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
