|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_009104155.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
Family |
Trihelix |
Protein Properties |
Length: 316aa MW: 35617.9 Da PI: 9.7934 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009104155.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 44.9 | 3.1e-14 | 27 | 122 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
W+++ + +Li+a ++ +l+rg l++++W+ev++++ ++ + r+ +qCk++++ l+k+yk +k++ +++ +s +p+f+
XP_009104155.1 27 WSEEATFTLIQAWGRRYVDLSRGGLRQKHWQEVANAVndrhfntgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSSE--SYVSAWPFFS 119
************************************************997777789************************95..56669***** PP
trihelix 84 qle 86
+l+
XP_009104155.1 120 DLD 122
*98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MKDAVNDSFS PGSSRPSPSM LSREDYWSEE ATFTLIQAWG RRYVDLSRGG LRQKHWQEVA 60 NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSSES YVSAWPFFSD 120 LDELLRETFP ATSSAGPDNS QRPSPSLPIV PVPVAPRSAI SRRPAPAIMS LGGDNLLGFR 180 GNLNAFAAAA AAAASPAYED DSDGSRSRSS GGNNRKRERE VEIEIEEKKG YKEVAEAIER 240 FGKIYEKVEE RKRKEMVELE KQRMRFAKEL ECHRMQLFTE MQVRLHKLRR SSGSNGPTSS 300 ANAALEYGMM DFPSYF
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC189221 | 1e-116 | AC189221.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010L05, complete sequence. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT3G58630.1 | 1e-127 | sequence-specific DNA binding transcription factors |