PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009104023.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 265aa MW: 29595.4 Da PI: 9.808

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009104023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.1	1.2e-15	195	237	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 ++++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ XP_009104023.1 195 RKQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRR 237 689**************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-13	189	238	No hit	No description
SMART	SM00338	6.8E-12	191	263	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.312	193	238	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-12	195	238	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.70E-23	195	240	No hit	No description
SuperFamily	SSF57959	1.88E-10	195	240	No hit	No description
PROSITE pattern	PS00036	0	198	213	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDSQRVIVED PKSQFLNRQQ GSSLYTLTLD EVQTHLGSSG KSLGSMNLDE LLNEGLSRQG 60 SLALPRDLSK KTVDEVWKDI QQDNKNGGSA HERRDKQGAL GEMTLEDLLL KAGVVAETIP 120 GSNHDDPGGA AGLAPWVQYH QLPSMTQPRS FFPYLVADMQ VMVSQASLMG GLSDTQTPGR 180 KRVASGEVVE KIVERKQKRM IKNRESAARS RARKQAYTHE LEIKVSRLEE ENERLRRQKE 240 VEKILPSSPP PDPKRQLRRT SSAPF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.8523	1e-146	flower\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269\|PubMed:15642716}.
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269\|PubMed:12376636}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009104023.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189506	0.0	AC189506.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104023.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	1e-154	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	M4CGC0	0.0	M4CGC0_BRARP; Uncharacterized protein
STRING	Bra003253.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-147	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]