PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103876.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 168aa    MW: 19280.9 Da    PI: 9.0554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-0592114123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++Cg++F +   L  H+r+H
  XP_009103876.1  92 HKCSICGQMFGTGQALGGHMRKH 114
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-43672IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.75E-647114No hitNo description
PfamPF139121.6E-104872IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9724875IPR007087Zinc finger, C2H2
SMARTSM003550.434870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PfamPF139122.4E-1091116IPR007087Zinc finger, C2H2
SMARTSM003550.008192114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.82792119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRDRSDYEE SITDLDIVKS LMMLSQSFVV KQIEVQQSTR SRTNDNQFEC KTCNRKFDSF  60
QALGGHRASH KKPKLSIDQE QVKHRYNENA AHKCSICGQM FGTGQALGGH MRKHRESMRT  120
EQPVVSSTVY PVLNRCNTSK CLDLNLTPLE NDLVYVFGKN LADFKFVN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.303410.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103876.11e-125PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD43e-70ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A078IRY51e-123A0A078IRY5_BRANA; BnaA07g37620D protein
TrEMBLM4CG161e-123M4CG16_BRARP; Uncharacterized protein
STRINGBra003148.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-93C2H2 family protein