PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103752.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 336aa    MW: 38214.4 Da    PI: 8.7295
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31202257156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W++eLH+rF++a+++LGGs++AtPk+i++lm+v+gLt+++vkSHLQkYRl+
  XP_009103752.1 202 KQRRCWSSELHRRFLHALQKLGGSHVATPKQIRDLMQVDGLTNDEVKSHLQKYRLH 257
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.339199259IPR017930Myb domain
SuperFamilySSF466893.05E-17200260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-27200260IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-27202257IPR006447Myb domain, plants
PfamPF002494.4E-7204255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAKKGDNMDY TLKCVQKKKD YTLKKKRCEE YIEALVEEQK KIQVFKRDLP LCLSLVTQAI  60
ESYRKELSEF SRSEHIQPEG SERTTSECEG RDGCIALCEE FVPIKSCERV KDDEAENNID  120
KKKSEWLQLW NQSPDPQPIE DQTTTVVAAV KENCDAFQKG KLAYSQPLKA ITPTPTASSS  180
TAETGGNKKE MEQQKQLQMH RKQRRCWSSE LHRRFLHALQ KLGGSHVATP KQIRDLMQVD  240
GLTNDEVKSH LQKYRLHTRR PATPTLTNGC ENPQQQQLIV VEGIWVPSKD AVNNRVYAPV  300
AVQPPPRSSP SEPRSIQRCK PPTSSSSTHP LHLPLS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103752.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894761e-143AC189476.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB080N15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103752.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9FPE81e-123HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A3P6B2J70.0A0A3P6B2J7_BRACM; Uncharacterized protein
STRINGBra012471.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34912863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-115G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]