PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009103698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | AP2 | ||||||||
Protein Properties | Length: 439aa MW: 47856.3 Da PI: 7.5587 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.3e-17 | 140 | 189 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_009103698.1 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.9E-9 | 140 | 189 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-15 | 140 | 197 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-17 | 141 | 197 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.82E-11 | 141 | 196 | No hit | No description |
SMART | SM00380 | 1.2E-32 | 141 | 203 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.82 | 141 | 197 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.26E-10 | 232 | 277 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-5 | 232 | 276 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.7E-10 | 233 | 281 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MLDLNLDADS PESTQYGDSY ADRKTSDGSG NRSETSTSSV INAEADDDSC STRAFTLNFD 60 ILKVGSSGDG CGGGGDESTA VTKEFFPVAG DCGHLRGSSS RSWIDLSFDG SRQGETNLVA 120 PAPAPAPVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY 180 DRAAIKFRGV DADINFTLGD YEEDMKQVQN LSKEEFVHIL RRQSTGFSRG SSKYRGVTLH 240 KCGRWEARMG QFLGKKAYDK AAISSNGREA VTNFELSSYQ NETNSETNNQ GAHDKLDLSL 300 GMSLSPGNAS KQNGRLFHYP SNTYETQRGV SLTIGNEFMG KPVNAPLPYG SSDHRAYWNG 360 YNNPVEGRAT EKRSEAEGGG MMSNWGWQGP GQTSAMRPQP PGPQPQLFSV AAASSGFSNF 420 RQQPPNDNAS SLGYFYPQP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.16261 | 0.0 | bud| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009103698.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009103698.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Refseq | XP_013653877.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Refseq | XP_013653880.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | Q9SK03 | 0.0 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A3P6C1H1 | 0.0 | A0A3P6C1H1_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g070350.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 0.0 | related to AP2.7 |