 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009103697.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
AP2 |
| Protein Properties |
Length: 454aa MW: 49570.2 Da PI: 6.9449 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009103697.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.6 | 5.6e-17 | 140 | 189 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
XP_009103697.1 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 189
78*******************......55************************997 PP
|
| 2 | AP2 | 39.8 | 1.1e-12 | 232 | 278 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+
XP_009103697.1 232 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEVEAARAYDKAAI 278
89********.7******5553..2.26**********99*********97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MLDLNLDADS PESTQYGDSY ADRKTSDGSG NRSETSTSSV INAEADDDSC STRAFTLNFD 60
ILKVGSSGDG CGGGGDESTA VTKEFFPVAG DCGHLRGSSS RSWIDLSFDG SRQGETNLVA 120
PAPAPAPVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY 180
DRAAIKFRGV DADINFTLGD YEEDMKQVQN LSKEEFVHIL RRQSTGFSRG SSKYRGVTLH 240
KCGRWEARMG QFLGKKYVYL GLFDSEVEAA RAYDKAAISS NGREAVTNFE LSSYQNETNS 300
ETNNQGAHDK LDLSLGMSLS PGNASKQNGR LFHYPSNTYE TQRGVSLTIG NEFMGKPVNA 360
PLPYGSSDHR AYWNGYNNPV EGRATEKRSE AEGGGMMSNW GWQGPGQTSA MRPQPPGPQP 420
QLFSVAAASS GFSNFRQQPP NDNASSLGYF YPQP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
