PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103694.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 233aa    MW: 25579.9 Da    PI: 4.6099
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.45.2e-43591581100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q++ql+a+la
  XP_009103694.1  59 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARLRDPVYGCAGAIYHLQRQVSQLQAQLA 153
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     +++ e
  XP_009103694.1 154 KTQVE 158
                     99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.37958159IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-4259156IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLKMEINGST STATPTASAV AVVSASETTT PVSSPSLTSS PPPSLSPPQP PQPQVVLSPC  60
AACKILRRRC AEKCVLAPYF PPTDPAKFTI AHRVFGASNI IKFLQELPES QRTDAVNSMV  120
YEAGARLRDP VYGCAGAIYH LQRQVSQLQA QLAKTQVELV SMQLQRSDLL ELFYKMEQTK  180
LSAQEGQQNM SFESSFDSGD EFISSPDEVT NDLVFLEDTN NNNSSMSWWD PLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-415816010112LOB family transfactor Ramosa2.1
5ly0_B7e-415816010112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103694.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738400.0AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103694.11e-173PREDICTED: LOB domain-containing protein 11-like
RefseqXP_013651783.11e-173LOB domain-containing protein 11-like
SwissprotQ9SK081e-127LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A397YSL01e-171A0A397YSL0_BRACM; Uncharacterized protein
TrEMBLM4D6341e-171M4D634_BRARP; Uncharacterized protein
STRINGBra011942.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-101LOB domain-containing protein 11