PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103567.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 395aa    MW: 44435.2 Da    PI: 4.7101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-163077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed+ll  +v ++G g+W+++ +  g+ R++k+c++rw ++l
   XP_009103567.1 30 KGPWTSAEDQLLTAYVDKHGEGNWNAVQKQSGLSRCGKSCRLRWVNHL 77
                     79*******************************************996 PP
2Myb_DNA-binding41.14e-1383126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g +T  E++l +++++ +G++ W++ a+ ++ gRt++++k++w++
   XP_009103567.1  83 KGGFTDKEEQLVIELHASMGNK-WARMAAQLP-GRTDNEIKNFWNT 126
                      6789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9212577IPR017930Myb domain
SuperFamilySSF466891.99E-2828124IPR009057Homeodomain-like
SMARTSM007178.8E-142979IPR001005SANT/Myb domain
PfamPF002491.2E-143077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-233184IPR009057Homeodomain-like
CDDcd001671.92E-103277No hitNo description
PROSITE profilePS5129422.51778132IPR017930Myb domain
SMARTSM007171.5E-1382130IPR001005SANT/Myb domain
PfamPF002493.2E-1283126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2485130IPR009057Homeodomain-like
CDDcd001671.13E-986128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVDETITQMG KVLHDSESGQ NLALEKTFHK GPWTSAEDQL LTAYVDKHGE GNWNAVQKQS  60
GLSRCGKSCR LRWVNHLRPS LKKGGFTDKE EQLVIELHAS MGNKWARMAA QLPGRTDNEI  120
KNFWNTRLKK LQRLGLPIYP DEVREQAMNA AVQNGQNSDH SQESLEPDCL EIPEFDFKYL  180
QLNNYQSVLL RNVPMGNNMI XQYFFQPNNM YNLIGSPYMS PPKRKRVREP ETDFLDTGGY  240
AANEQSGQLW NYPFVESNAA KYSSPSEKLE LPSFQCCDPL GDWETQHSNP MLAVESDSTL  300
VESPLTDCPS SGLLESVVYG SSGEKQATNS TDPDSPLLLQ SSLFGHIELT PAFANNTETD  360
MVPFGPTSSS ERLTSSLESS DWIRQLLGED RDYTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27301307106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103567.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765471e-166KR076547.1 Brassica napus MYB transcription factor 81-1 (MYB81-1.1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018508834.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB104
TrEMBLM4D6C90.0M4D6C9_BRARP; Uncharacterized protein
STRINGBra012038.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-139myb domain protein 81