 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009103447.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
AP2 |
| Protein Properties |
Length: 360aa MW: 40734.5 Da PI: 9.053 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009103447.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53 | 8.7e-17 | 103 | 152 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
XP_009103447.1 103 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 152
78*******************......55**********************99987 PP
|
| 2 | AP2 | 42.7 | 1.4e-13 | 195 | 242 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52
s+y+GV+ +k grW+A++ + + k+++lg f+t+ eAa+a+++a+ k
XP_009103447.1 195 SKYRGVTLHK-CGRWEARLGQF----LNkKYVYLGLFDTEMEAARAYDKAAIK 242
89********.7******5553....234**********77*********987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MWNLNDSPDH HEESDGRWKR AGDVPISMRS STTCLLSVPP VTRNFFPSQI MEQEVPGISG 60
SGITRNQCLV RSDPSGSGRP ENLELEITPP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH 120
IWDCGKQVYL GGFDTAHAAA RAYDRAAVKF RGVDADINFN IEDYVEDLKQ MSSLTKEEFM 180
HVIRRQSTGF PRGSSKYRGV TLHKCGRWEA RLGQFLNKKY VYLGLFDTEM EAARAYDKAA 240
IKSNGKDAVT NFDPKVYEEQ HNSPEKQWDD HNLDLSLVES NSEEFGTKSE TASMRNGFRD 300
EERLLGSHLS LAMTTTATVG SEKPLDGGGK RVGMAASSGF SPRFPPWNHH TPRTFHFFRP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
