PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103097.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 422aa    MW: 47848.7 Da    PI: 9.2033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-0592113223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C  Cgk F+++  L  H+ +H
  XP_009103097.1  92 YCRECGKGFPSSKALCGHMASH 113
                     5*******************99 PP
2zf-C2H211.90.00068366388123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_009103097.1 366 HECPICFRVFKSGQALGGHKRSH 388
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-6634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.22E-6636No hitNo description
PROSITE profilePS5015711.157936IPR007087Zinc finger, C2H2
SMARTSM003550.15931IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-5933IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576678.84E-582114No hitNo description
SMARTSM003550.01691113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.69991118IPR007087Zinc finger, C2H2
PfamPF139125.6E-593115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM003550.14366388IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-10366388IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974366388IPR007087Zinc finger, C2H2
PROSITE patternPS000280368388IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEQCIEKRFV CKFCNKRFAC GKSLGGHIRT HMSNKNSADS DEDEHTKLMF DENGGQSSYG  60
LRENPKKNKR FVDQREMMAL KHHQHQQQQL LYCRECGKGF PSSKALCGHM ASHSEREKIV  120
MDSQSDTEAS LSTIRRRSKR AVKHHHGSSI MNQYDAASSD ESEIEPEQEQ MALSLMMLSR  180
DDSGFKKGHN LVVNSFAESS DNNSVILETK SSSGEQLRKI FKVKESCKKD KLGVGVDHLR  240
NGEDNGYVSD NSDSGYFRNG PKKLDSDVTV DGFLRNKAAM GFNSSEDKSL NRFRTGSDRS  300
STKYDLRKSR TSFPTYGRKK MRYEFTESVY DSGDQHSLET ESCAETIKIH SKPPMVKKAK  360
KKSKGHECPI CFRVFKSGQA LGGHKRSHFI GNHEHRTLVI QQHQVAHEMH TLIDLNLPAP  420
ID
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103097.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894291e-137AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609661e-137HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103097.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_018508867.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLM4D7J00.0M4D7J0_BRARP; Uncharacterized protein
STRINGBra012450.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein