PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103094.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 333aa    MW: 36872.1 Da    PI: 8.6199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05527123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C+k F++  +L  Hir H
  XP_009103094.1  5 YVCKFCNKKFTSGKSLGGHIRIH 27
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-7230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-7231No hitNo description
SMARTSM003550.0043527IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.383532IPR007087Zinc finger, C2H2
PfamPF139122.9E-5525IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139124.7E-4289304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEKKYVCKFC NKKFTSGKSL GGHIRIHSNE YTVASDSFNG KNPKMKNNNK KRLVEHKQLC  60
CGECGSNHMD CHCVGEKMVM DSQSDTETTS SAPTRKRSKK LMKQSNSESF STSSASEIDQ  120
EHKDTALSLM MMSIDSKGHN LVVNSLAESS ENNSEILETK ASSGEQLNVK NQDLKTDKVA  180
VDDQLRSTND ADSYSSDSDY FMNGPKKSDS DISVEGSLRN TELNSFKNGD ELGVKEGGSK  240
YQLRKSKRVL PSSYESDSCA DRNMKIHRSG DCKMLKKASG ANKSSKAHEF KSSQALGGHK  300
RSHSIESQEQ KIKHKAAADM RIDLNLPVQD IDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103094.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103094.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_018508554.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLM4D7J20.0M4D7J2_BRARP; Uncharacterized protein
STRINGBra012452.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.12e-59C2H2-like zinc finger protein