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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009102986.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
SBP |
Protein Properties |
Length: 390aa MW: 43666.6 Da PI: 8.4862 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009102986.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 128.5 | 2.6e-40 | 171 | 247 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
+Cq++gCe dls+ak+yhr+h+vCe hsk+p+v+vsg+e+rfCqqCsrfh++sefDe+krsCr+rL++hn+rrrk+q
XP_009102986.1 171 RCQIDGCELDLSSAKDYHRKHRVCENHSKCPKVTVSGIERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 247
6**************************************************************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MDCNMRSPFL WDLENLILPN SSKTENDKDQ LTTATEWETE KGEGIESMFP CFNGLERVSN 60 CSTTSLWHTP VSKSSQSTST NSSSPGVKQR MLASESSPGD SCCNIQVKAS VASAESDLSL 120 KLGKRTYSEE LWGRSNNNDI SAVSVKLLTP PSVVSRKKSK SSCGQSMQVP RCQIDGCELD 180 LSSAKDYHRK HRVCENHSKC PKVTVSGIER RFCQQCSRFH AVSEFDEKKR SCRKRLSHHN 240 ARRRKPQGVF PFNPDRVYDR RQHTNMLWNG LSLDTRSEEK FAWETTYDIK PTQTESGFTL 300 SFQRGNGSEQ QLFASSNHSY STYQTSGGLS AGKPKFQLHG QGVGEYSGVL HESQEFHRAL 360 SLLSTSSSDH LVQPHAQPLS LLFSYDGVPK
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 227 | 244 | KKRSCRKRLSHHNARRRK |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |