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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009102983.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
SBP |
Protein Properties |
Length: 374aa MW: 41575.4 Da PI: 7.9444 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009102983.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 125.3 | 2.5e-39 | 155 | 231 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
+Cq++gCe dls+ak+yhr+h+vCe hsk+pvv+v g e+rfCqqCsr h++sefDe+krsCr+rL++hn+rrrk+q
XP_009102983.1 155 RCQIDGCELDLSSAKDYHRKHRVCESHSKCPVVTVGGFERRFCQQCSRLHAVSEFDEKKRSCRKRLSHHNARRRKPQ 231
6**************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MDCNMVSPLW DWEHLIIPNL SKTETDKKQP STTDWDIEKG EGIESILFPS FTGSSSTTGF 60 LSSQLTSTNS SSPKLKSSLG DFDQVKASTA LQVVSAESDL CLKLGKRSYS DEETWGRNNN 120 NDISAAVSVK LLTPPSVVAL KKSKSSCGQS MQVPRCQIDG CELDLSSAKD YHRKHRVCES 180 HSKCPVVTVG GFERRFCQQC SRLHAVSEFD EKKRSCRKRL SHHNARRRKP QGMFPLNPER 240 VYNGRQHTNM LWNELSLNTG SEEKYAWGTT TYETKPTQME SGFTLNFQRG SGAEEQQVFA 300 SSNLSFSAYQ TSAGKSNVQL PSKGVGEYSG GLYETQDFYS ALSLLSTSSD SHGTKHHPMV 360 ESQPIHGIFP THFL
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 211 | 228 | KKRSCRKRLSHHNARRRK |
Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Yu N,Niu QW,Ng KH,Chua NH
The role of miR156/SPLs modules in Arabidopsis lateral root development. Plant J., 2015. 83(4): p. 673-85 [PMID:26096676] - Xu M, et al.
Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584] - Gao R,Wang Y,Gruber MY,Hannoufa A
miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79. Front Plant Sci, 2017. 8: p. 2226 [PMID:29354153] - Dotto M,Gómez MS,Soto MS,Casati P
UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana. Plant Cell Environ., 2018. 41(6): p. 1394-1406 [PMID:29447428]
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