PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 334aa MW: 37381.5 Da PI: 9.8661

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009102628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.2	7.3e-08	203	240	17	54
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 A+rsR RK+++i eLe+ v++L+ae ++ el+ l++ XP_009102628.1 203 AQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQ 240 89*************************99999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0073	192	251	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.30E-14	195	242	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.8E-8	203	244	No hit	No description
SuperFamily	SSF57959	7.74E-6	203	245	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAGTKGSESV RSLMNPGKNA LLPPKIPFPS GLMGSRHGHK VSVEKAHQRT SSESHLVEEE 60 LPFWLDDLLN EPESPSRKSG HRRSASDSYA YLDAANAATT ISDFSYRNPV SSIQRGIQEL 120 DPSQDASFYA DGSFLKQRNR PSGARPSWTR ESVGGGKHMG ASSYISQDAT AETKRLSSEE 180 NNSNPQPGAY EADNTKRAKQ QFAQRSRVRK LQYISELERN VQTLQAEGSK VSAELDFLNQ 240 RNLILSLENK ALKHRLESIA QEKLIKQLEQ EVLEREIGRL RALYQQQQHT RQQSASHKRA 300 SSKDLDSQFS TLSLNAKDSN CRRDSLSVMG QLHF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009102628.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009102628.1	0.0	PREDICTED: uncharacterized protein At4g06598-like
Swissprot	Q8W3M7	1e-43	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A078GFA6	0.0	A0A078GFA6_BRANA; BnaA01g21580D protein
STRING	Bo1g087780.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-160	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]