PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009102348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 313aa MW: 35275.2 Da PI: 8.4117 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 1.9e-14 | 83 | 159 | 11 | 95 |
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++ l++p f+++h +gk +++ t tl++ ++W+v + ++ lt+GWkeF++a++L+ gD+v+Fkl+g++ f +v+ XP_009102348.1 83 FQTH-LTIPIVFFSKHiQGK-TNGNTWTLTSdAMDQTWQVIQ--EERR----LTRGWKEFAEAHDLRIGDIVIFKLKGSMVF--HVT 159 5566.9**********7555.56668888874777*****99..7777....************************998888..665 PP | |||||||
2 | B3 | 56.6 | 4.8e-18 | 200 | 294 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 fk++++ ++ +++ l lp + + ++ke+ k+ +l + +g+ W+v ++++ ++g y+++ GW++F+ +n+ gD++vF ++g+ ++ +++ v XP_009102348.1 200 FKAEVTDSNVREDKLNLPVGATGCNALNKEC-KKAKLVNIEGKAWNVSMRFNESGGFYYIK-GWRKFCAENKCHIGDSFVFNVVGDGNTLPLMCV 292 78999999999999*******9888999877.6*****************99999999998.***********************9877799888 PP E- CS B3 97 fr 98 ++ XP_009102348.1 293 CS 294 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-20 | 67 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-20 | 69 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.196 | 72 | 164 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.93E-15 | 73 | 161 | No hit | No description |
SMART | SM01019 | 3.0E-18 | 75 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-9 | 85 | 156 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-15 | 198 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.52E-14 | 199 | 287 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-16 | 199 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.435 | 199 | 296 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-15 | 200 | 296 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-16 | 200 | 294 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MVPIPYLKSP NQTRFPLIFG KPFPLSTLRR HNRGRSPLPP PATANSTEEE TPDQQRPIPP 60 IATQPKMVQP QEPHFFQPLL PGFQTHLTIP IVFFSKHIQG KTNGNTWTLT SDAMDQTWQV 120 IQEERRLTRG WKEFAEAHDL RIGDIVIFKL KGSMVFHVTP FGPSCCDIQY TYPNSMEEAH 180 DHQNNTGTGA RFSYSWDYCF KAEVTDSNVR EDKLNLPVGA TGCNALNKEC KKAKLVNIEG 240 KAWNVSMRFN ESGGFYYIKG WRKFCAENKC HIGDSFVFNV VGDGNTLPLM CVCSPSKECL 300 KSAGDIASSS RVN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009102348.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189599 | 1e-167 | AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102010.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X1 | ||||
Refseq | XP_009102348.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X1 | ||||
Refseq | XP_009110110.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X1 | ||||
Refseq | XP_009110644.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X1 | ||||
Refseq | XP_009131312.1 | 0.0 | PREDICTED: B3 domain-containing protein REM7-like isoform X1 | ||||
Refseq | XP_013641421.1 | 0.0 | B3 domain-containing protein REM7-like | ||||
Refseq | XP_013652683.1 | 0.0 | B3 domain-containing protein REM7-like | ||||
Refseq | XP_013662269.1 | 0.0 | B3 domain-containing protein REM7-like | ||||
Refseq | XP_013692954.1 | 0.0 | B3 domain-containing protein REM7-like | ||||
Refseq | XP_013743464.1 | 0.0 | B3 domain-containing protein REM7-like | ||||
TrEMBL | M4F5X7 | 0.0 | M4F5X7_BRARP; Uncharacterized protein | ||||
STRING | Bra036483.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16565 | 3 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 7e-63 | B3 family protein |