PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GATA

Protein Properties

Length: 200aa MW: 22115 Da PI: 7.9176

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009102248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	61.9	7.5e-20	93	127	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C tt+TplWR+gp g+k+LCnaCG++++k+++ XP_009102248.1 93 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 127 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	13.468	87	123	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.47E-13	87	127	No hit	No description
SMART	SM00401	2.9E-19	87	139	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	6.1E-17	91	127	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.79E-13	92	124	No hit	No description
Pfam	PF00320	1.7E-17	93	127	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	93	118	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MMGYQTNPNF SMFFSLENDD QNNQDYNSYN SLSSSTSVDC TLSLGTPSTR LDDHRRYSSV 60 SSNMSGDYFY HGGSAKTTSY KKGGGDHNLP RRCASCDTTS TPLWRNGPKG PKSLCNACGI 120 RFKKEERRAA ARNSITSVGG SSAAEIPAGG NYYNHHHHYP SSSPSWAHQN TQRVQYFSPA 180 PEMEYPFVDD ATAASFLSWN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009102248.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009102248.1	1e-149	PREDICTED: GATA transcription factor 20-like
Refseq	XP_013651431.1	1e-149	GATA transcription factor 20-like
Swissprot	Q9ZPX0	1e-103	GAT20_ARATH; GATA transcription factor 20
TrEMBL	A0A397YIW1	1e-148	A0A397YIW1_BRACM; Uncharacterized protein
STRING	Bo7g010220.1	1e-137	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6159	17	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18380.1	6e-90	GATA transcription factor 20

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795]