PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009102036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 348aa MW: 39105 Da PI: 5.9549 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.5 | 9.8e-31 | 193 | 247 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav+qLGG e+A P ++l++mkv+gLt++hvkSHLQkYR+ XP_009102036.1 193 KGRVRWTPELHEAFVEAVNQLGGMENAKPMAVLKHMKVQGLTIYHVKSHLQKYRT 247 569***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.344 | 190 | 250 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-29 | 191 | 248 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.35E-17 | 191 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-21 | 193 | 247 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-9 | 195 | 246 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.7E-19 | 278 | 323 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
METRPFRSMS SLALTSSVPN PSVNADISFS SEHNQSMASP YHLLSANGGA VGHNIYSNDL 60 HNHPSMASHI GSSSDTPFIS EILDWDHPAP IPDLFDFPLD IPIQTNQMDD IHRPSELAEL 120 DEELITDDEN PLMSALLNDL FLDTSSTSAA SKVQEPTMQS QIQQPQVVLH QTSPIVRTVS 180 SNSFTSNNTA ATKGRVRWTP ELHEAFVEAV NQLGGMENAK PMAVLKHMKV QGLTIYHVKS 240 HLQKYRTARH VPEPSEGWRE KKLTPVEHVT SLDTKSGMYI SEALRIQMEV QKQLHEQLEI 300 QRKMQLQIEK QGKALVMMIE KQNMEFGKPE QEEEAEADSR RSKRPRKG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-25 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-25 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-25 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-25 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-25 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-25 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-25 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-25 | 193 | 250 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in male gametophyte development. {ECO:0000269|PubMed:22101548}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00111 | ampDAP | Transfer from AT2G20400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009102036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018508826.1 | 0.0 | PREDICTED: myb family transcription factor PHL4 isoform X4 | ||||
Swissprot | Q8GXC2 | 1e-111 | PHL4_ARATH; Myb family transcription factor PHL4 | ||||
TrEMBL | M4F5W3 | 0.0 | M4F5W3_BRARP; Uncharacterized protein | ||||
STRING | Bra036469.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20400.1 | 1e-111 | G2-like family protein |
Publications ? help Back to Top | |||
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