PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009101914.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 178aa MW: 20083.8 Da PI: 6.7693

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009101914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.1	3.5e-39	4	103	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++ Cv+apyfp ++++++a++hk+FGas+v k+l++l++++r+da++slvyeA+ + dPv+G+ +++ +lq+ql+ l+ +l+ XP_009101914.1 4 PCAACKYLRRKCTQACVFAPYFPPNKQEDYAAIHKVFGASQVAKILNDLHPSQRQDAVTSLVYEAQTLLLDPVHGCSRHVYNLQNQLQDLQDQLQ 98 7********************************************************************************************** PP DUF260 96 llkee 100 +++e XP_009101914.1 99 IARNE 103 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.274	3	104	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-39	4	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MSMPCAACKY LRRKCTQACV FAPYFPPNKQ EDYAAIHKVF GASQVAKILN DLHPSQRQDA 60 VTSLVYEAQT LLLDPVHGCS RHVYNLQNQL QDLQDQLQIA RNELVSYNNI IPSLDLPPPI 120 TYQQNHQNPM LMPVVSNYGG PLTSEQLREE AHRVESERSA QVPQMQPNAA PSKRDDCP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-38	2	107	9	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-38	2	107	9	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009101914.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018513168.1	1e-130	PREDICTED: LOB domain-containing protein 28
Swissprot	Q9SCS4	1e-55	LBD28_ARATH; LOB domain-containing protein 28
TrEMBL	M4EMJ3	1e-128	M4EMJ3_BRARP; Uncharacterized protein
STRING	Bra030013.1-P	1e-129	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50510.1	4e-50	LOB domain-containing protein 28