PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101826.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 406aa    MW: 45075.7 Da    PI: 9.6481
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.1e-11331383557
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                     k  rrk+kNRe+A rsR+RK  ++ eLe ++++L +eN++L k+  ++  e++
  XP_009101826.1 331 KTYRRKIKNRESAARSRARKMLQTMELEAEAEKLRKENHELLKKQAKIMSEMQ 383
                     5679***********************************99877666555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.8E-7327391IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.473329383IPR004827Basic-leucine zipper domain
PfamPF001701.7E-8331383IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.66E-9331383No hitNo description
Gene3DG3DSA:1.20.5.1707.2E-12333383No hitNo description
PROSITE patternPS000360334349IPR004827Basic-leucine zipper domain
CDDcd147071.07E-14334380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDNNWNFKTL GTGPRGAMSR LPVSAPLSQQ GSLYSRTLDQ IQNNLGKDYG SMNMEEFLMS  60
IYNAEGTQGI VPTNGVNEGL HRQGSITLPR ILSQKTVDEV WKYITEEEHT HNDGGRTNIP  120
QIQKQPTLAD ITLEDFLTLA GAILDPSSIS GFPNTSLNVE FQQKPMVSDV LGNINTVPIN  180
RVHGSYLHPN VNGSTSAYKP RQEQQQQHNP FQPQQPNMSK PHGYGYGTQV AFTSGQVNAH  240
GIRDSYMESG DQSHQENNVT LVQSVAPVPG GAMSVEVCSQ ITPFPVLDGM PKINAGSSIV  300
SPFPFTTTVS NSVRDRNRNN GIAAEKKLVE KTYRRKIKNR ESAARSRARK MLQTMELEAE  360
AEKLRKENHE LLKKQAKIMS EMQTELGKEI TNGSTKRLRR TKSNIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101826.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 8
RefseqXP_009101827.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 8
TrEMBLA0A397Z4W00.0A0A397Z4W0_BRACM; Uncharacterized protein
STRINGBra033649.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156311417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42910.12e-91bZIP family protein