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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009101773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 27575.4 Da PI: 10.0003 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 2.9e-09 | 88 | 136 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+r h + Er RR++ ++++ L++llP K +K +i+ekAv+ I++L+ XP_009101773.1 88 RCRRHMMKERTRREKQKQSYLALQSLLPAT------KSDKNSIVEKAVDQIRKLE 136 6788*************************9......788888**********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-11 | 85 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.87E-9 | 86 | 140 | No hit | No description |
PROSITE profile | PS50888 | 10.626 | 87 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-8 | 88 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 88 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-7 | 93 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDFFSLDSVF QEEGENFWDM IAGDVSGDGD GDKTVGVPNR SAFRSYVRDH EQRRVSSSST 60 VNVKRRMVNL LRKNWEEKKI VAVPGKERCR RHMMKERTRR EKQKQSYLAL QSLLPATKSD 120 KNSIVEKAVD QIRKLEGLKK ELERKMNVLE AKSARDHDEM NGKKVRFNVQ EPLSGIDSVV 180 EVLQCLKSMG TNLNTVQANF SPHEFSATMN IETQIRGEEV EKRVQKRLQE TEWKLLLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009101773.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189402 | 0.0 | AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence. | |||
GenBank | AC189591 | 0.0 | AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009101773.1 | 1e-176 | PREDICTED: transcription factor bHLH92 | ||||
Refseq | XP_022570422.1 | 1e-176 | transcription factor bHLH92-like | ||||
Swissprot | Q9FIX5 | 1e-109 | BH092_ARATH; Transcription factor bHLH92 | ||||
TrEMBL | A0A078G773 | 1e-175 | A0A078G773_BRANA; BnaA06g36620D protein | ||||
STRING | Bra033690.1-P | 1e-141 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9602 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 1e-106 | bHLH family protein |
Publications ? help Back to Top | |||
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