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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009101734.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
C2H2 |
Protein Properties |
Length: 464aa MW: 50644.6 Da PI: 8.5941 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009101734.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15 | 6.9e-05 | 67 | 87 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk F r nL+ H r H
XP_009101734.1 67 CEVCGKGFQRDQNLQLHRRGH 87
*******************88 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010150 | Biological Process | leaf senescence |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0003676 | Molecular Function | nucleic acid binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 464 aa
Download sequence Send
to blast |
MTGEVLKTVS SGSAAFAPSS STLDHDESLI NPPVVKKKRN LPGNPDPEAE VIALSPKTLM 60 ATNRFLCEVC GKGFQRDQNL QLHRRGHNLP WKLKQRTSKE VRKRVYVCPE KTCVHHDPAR 120 ALGDLTGIKK HFCRKHGEKK WTCEKCAKRY AVHSDYKAHS KTCGTREYRC DCGTIFSRRD 180 SFITHRAFCD ALAEETAKIN AASHLNGLSS AGTVGMNLNY QYLMGTLNPP LQPFVPKPPT 240 NQNHHHHFLP PPPSSSSSLS LWMGQDIAPT SQTQPQDYEW VFANAKAASG CINNNNHNDH 300 ITQTANASST TTATLSVPSL FSSDQTQSPN ANVNMSATAL LQKAAEIGAN STTATSTNPS 360 AFLKSFPLKS SDQTTTSYDD GEKFFALFGS NNNIGVVSNS HDQETENVRN DVTVASAMDE 420 LQNYPWKRRK VDGGGEGGGG GQTRDFLGVG VQTLCHPSSI NGWI
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21265895}. |
Uniprot | TISSUE SPECIFICITY: Highly expressed in vegetative organs and at lower levels in flowers and siliques. Expressed predominantly in roots. In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000305|PubMed:21265895}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |