PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009101328.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 447aa MW: 49417.4 Da PI: 5.488

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009101328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	118	138	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++Cp+Cg +F++ ++ +H XP_009101328.1 118 FECPICGNPFKTEEEVSVHVE 138 89****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.58	118	146	IPR007087	Zinc finger, C2H2
SuperFamily	SSF143503	2.62E-18	169	253	IPR018997	PUB domain
CDD	cd09212	2.10E-21	172	256	No hit	No description
Pfam	PF09409	9.0E-18	172	240	IPR018997	PUB domain
SMART	SM00580	3.7E-23	173	240	IPR018997	PUB domain
SuperFamily	SSF54236	2.53E-12	313	422	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	1.4E-7	338	421	No hit	No description
PROSITE profile	PS50033	10.161	338	422	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MDDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSAPV NPIQNRFNPP QSSNPTPRPT 60 KPSHSPSAPL PEKPVTSGSE KKPDPDPVRA PPQDGFDPYG AFITSSNRSQ NGYSLNMFEC 120 PICGNPFKTE EEVSVHVEET CLGETTTTTN GDEPASEVEK LVVVYLSGKP TESSVDVLLR 180 LLKNIVKEPE NGKFRKIRMS NAKIKEAIGD VAGGVELLEL VGFELKEEND EVWAVMDVPG 240 GDQTQLINEV VGMLEKRNDE VLPVEPVAAA PKKIDREIRV FFSVAENVAS RIEVPDSFYS 300 LSADEIKREA DLRRKKIAES QLLIPRSYKE KQAKAARKRY KRSMIRVQFP DGVVLQGVFA 360 PWEPTFALYE FVSSALKEPS LQFELLDPVL VKRRVIPHTP APGQKPRTLE DEELVPSALI 420 KFRPIETSSL VYTGLCNELL EISEPLT

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MDDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSAPV NPIQNRFNPP QSSNPTPRPT  60
KPSHSPSAPL PEKPVTSGSE KKPDPDPVRA PPQDGFDPYG AFITSSNRSQ NGYSLNMFEC  120
PICGNPFKTE EEVSVHVEET CLGETTTTTN GDEPASEVEK LVVVYLSGKP TESSVDVLLR  180
LLKNIVKEPE NGKFRKIRMS NAKIKEAIGD VAGGVELLEL VGFELKEEND EVWAVMDVPG  240
GDQTQLINEV VGMLEKRNDE VLPVEPVAAA PKKIDREIRV FFSVAENVAS RIEVPDSFYS  300
LSADEIKREA DLRRKKIAES QLLIPRSYKE KQAKAARKRY KRSMIRVQFP DGVVLQGVFA  360
PWEPTFALYE FVSSALKEPS LQFELLDPVL VKRRVIPHTP APGQKPRTLE DEELVPSALI  420
KFRPIETSSL VYTGLCNELL EISEPLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	2e-12	293	422	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	335	343	ARKRYKRSM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.31562	0.0	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009101328.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101328.1	0.0	PREDICTED: plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	M4E7W0	0.0	M4E7W0_BRARP; Uncharacterized protein
STRING	Bra024866.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]