PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008246406.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 520aa MW: 56927.2 Da PI: 9.1427

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008246406.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_008246406.1 93 FVCEICKKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	12.1	0.00061	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_008246406.1 169 WKCDKCSKKYAVQSDWKAHSKTC 191 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.87E-6	92	115	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-4	92	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.039	93	115	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	93	115	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	134	164	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.3E-4	157	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.87E-6	164	189	No hit	No description
SMART	SM00355	150	169	189	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MSIITGSAAG SFSSGNTGGE EVQQQQQQEL LNHANFHGSN SFLSTTPPNI NSNGTQPKQP 60 TQAKRKRNLP GTPDPSAEVV ALSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK 120 LKQRTSTEII KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV 180 QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAI AEENNTANQG VLMSNNINMG 240 APILQGQVSN SDLISPSSIN NSNKTTNNPS TRSGTTSDQF NQNFDTKIPL SLVPQQPLPM 300 SSKPLNMLPR SLNNNNNNTS SSSTSPLLFE LSRGHGLIPS SSGHLSATEL LQKAAQMGAT 360 MSSTSPSPSG TTITSMAPST YGTTTAGGYN VNPFMQHRDH HNVNVGPQLE NSFFGANNYA 420 QMGMYGGLLF DPHQNNGLLK NMEQDNNGNS SKLGLRSTNV SGGDTLTVDF LGIGGSANVN 480 RPEDFHGQQK QQHDQHQQQQ QDQLGFGGID DDHLRMQRFN

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MSIITGSAAG SFSSGNTGGE EVQQQQQQEL LNHANFHGSN SFLSTTPPNI NSNGTQPKQP  60
TQAKRKRNLP GTPDPSAEVV ALSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK  120
LKQRTSTEII KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAI AEENNTANQG VLMSNNINMG  240
APILQGQVSN SDLISPSSIN NSNKTTNNPS TRSGTTSDQF NQNFDTKIPL SLVPQQPLPM  300
SSKPLNMLPR SLNNNNNNTS SSSTSPLLFE LSRGHGLIPS SSGHLSATEL LQKAAQMGAT  360
MSSTSPSPSG TTITSMAPST YGTTTAGGYN VNPFMQHRDH HNVNVGPQLE NSFFGANNYA  420
QMGMYGGLLF DPHQNNGLLK NMEQDNNGNS SKLGLRSTNV SGGDTLTVDF LGIGGSANVN  480
RPEDFHGQQK QQHDQHQQQQ QDQLGFGGID DDHLRMQRFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-34	165	236	3	72	Zinc finger protein JACKDAW
5b3h_F	5e-34	165	236	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008246406.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008246406.1	0.0	PREDICTED: protein indeterminate-domain 2
Swissprot	Q9SCQ6	1e-112	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	M5WNC7	0.0	M5WNC7_PRUPE; Uncharacterized protein
STRING	XP_008246406.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-99	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]