PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008245673.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 430aa    MW: 47790.4 Da    PI: 9.2022
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008245673.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1768127155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_008245673.1  68 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 127
                     57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-1368127IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-1768136IPR016177DNA-binding domain
PROSITE profilePS5103220.12669135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1569136IPR001471AP2/ERF domain
SMARTSM003801.9E-2569141IPR001471AP2/ERF domain
PRINTSPR003674.3E-57081IPR001471AP2/ERF domain
PRINTSPR003674.3E-5117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MASSSSDPGP KTESGGGGGA GAEASEAVTA SDQLLLYRGL KKAKKERGCT AKERISKMPP  60
CAAGKRSSIY RGVTRHRWTG RYEAHLWDKS TWNQNQNKKG KQVYLGAYDD EEAAARAYDL  120
AALKYWGPGT LINFPVTDYT RDLEEMQNMS REEYLASLRR FDFGLKSSGF SRGISKYRGL  180
SSRWEPSLGR MGGSEYFNSI HYGTGDDPAT ESEFLGAFCI ERKFDLTSYI KWWGTNKSRQ  240
ADTSTKSSEE TKHGFVGDIG VELKTLEWEI QPTEPYQIPR LGISRVSKKH KGARVSAMSI  300
LSRSAAYKNL QENASKKQEN NADNDENENK NTIHKMDYGK AVEKSTSHDE RLSAALGMSS  360
GLSLQVQRNA FPLTPFLSAP LMTNYNTIDP LVDPILWTSL APVLPSGISR NAEITKTETS  420
STFTLFRPEE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008245673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245673.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A251N7C20.0A0A251N7C2_PRUPE; Uncharacterized protein
STRINGXP_008245673.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.21e-165AP2 family protein